Rcwl
R interface and toolchain for the Common Workflow Language
The Rcwl/RcwlPipelines package can be a simple and user-friendly way to manage command line tools and build data analysis pipelines in R using Common Workflow Language (CWL).
Hello world!
library(Rcwl)
inputs <- InputParamList(
InputParam(id = "sth")
)
echo <- cwlProcess(baseCommand = "echo", inputs)
echo$sth <- "Hello World!"
res <- runCWL(echo)
RcwlPipelines
cwlUpdate()
cwlSearch("STAR")
STAR <- cwlLoad("tl_STAR")